Same commands, but more detail here, or get quick start code on Github here.
1. Get containers with the same scientific filesystem
singularity pull --name scif-cli shub://vsoch/scif:scif
docker pull vanessa/scif:hw
2. View the scientific filesystem entrypoint
docker run vanessa/scif:hw
./scif-cli
3. Discover Installed Apps
docker run vanessa/scif:hw apps
./scif-cli apps
4. Commands
Help
docker run vanessa/scif:hw help hello-world-env
./scif-cli help hello-world-env
Inspect
docker run vanessa/scif:hw inspect hello-world-env
./scif-cli inspect hello-world-env
Run
docker run vanessa/scif:hw run hello-world-echo
./scif-cli run hello-world-echo
Test
# Passing Test (test script returns 0 with no arguments)
docker run vanessa/scif:hw test hello-world-script
./scif-cli run hello-world-echo
echo $?
# Failing Test (test script returns argument as return code)
docker run vanessa/scif:hw test hello-world-script 255
./scif-cli run hello-world-echo 255
echo $?
Execute
docker run vanessa/scif:hw exec hello-world-echo echo "Another hello!"
./scif-cli exec hello-world-echo echo "Another hello!"
Execute command with environment variable $OMG
docker run vanessa/scif:hw exec hello-world-env echo [e]OMG
./scif-cli exec hello-world-env echo [e]OMG
Interactive shell
./scif-cli shell
docker run -it vanessa/scif:hw shell
Shell with application active
./scif-cli shell hello-world-env
docker run -it vanessa/scif:hw shell hello-world-env
Python interactive client
./scif-cli pyshell
docker run -it vanessa/scif:hw pyshell